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    LOC4347228 uncharacterized LOC4347228 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347228, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4347228
    Gene description
    uncharacterized LOC4347228
    Locus tag
    OSNPB_090451800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0488D02.7; OJ1163_C07.30
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 10.3), roots after flowering (RPKM 9.9) and 6 other tissues See more
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    Genomic context

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    See LOC4347228 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (21325838..21328753, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (16945130..16948079, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene protein disulfide isomerase-like 2-3 Neighboring gene STOREKEEPER protein Neighboring gene uncharacterized LOC112936381 Neighboring gene lysM domain-containing GPI-anchored protein LYP4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4347228
    Names
    Os09g0451800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      21325838..21328753 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015756318.3 → XP_015611804.1  uncharacterized protein LOC4347228

      UniProtKB/TrEMBL
      Q0J1B8, Q67UF1
      Conserved Domains (1) summary
      pfam07800
      Location:46 → 187
      DUF1644; Protein of unknown function (DUF1644)

    2. XM_026020408.2 → XP_025876193.1  uncharacterized protein LOC4347228

      UniProtKB/TrEMBL
      Q0J1B8, Q67UF1
      Conserved Domains (1) summary
      pfam07800
      Location:46 → 187
      DUF1644; Protein of unknown function (DUF1644)

    3. XM_026020407.2 → XP_025876192.1  uncharacterized protein LOC4347228

      UniProtKB/TrEMBL
      Q0J1B8, Q67UF1
      Conserved Domains (1) summary
      pfam07800
      Location:46 → 187
      DUF1644; Protein of unknown function (DUF1644)
    Nucleotide Protein
    Heading Accession and Version

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