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    LOC4336290 VAN3-binding protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336290, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4336290
    Gene description
    VAN3-binding protein
    Locus tag
    OSNPB_040498000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 3.8), roots after flowering (RPKM 3.2) and 5 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (25394932..25398095)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24896668..24900761)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein CONSTANS-LIKE 3 Neighboring gene uncharacterized LOC4336289 Neighboring gene cytochrome c oxidase subunit 6b-2 Neighboring gene uncharacterized LOC9267297

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    VAN3-binding protein
    Names
    Os04g0498000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      25394932..25398095
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781456.3 → XP_015636942.1  VAN3-binding protein

      UniProtKB/TrEMBL
      Q7XUK8
      Conserved Domains (2) summary
      pfam05703
      Location:14 → 233
      Auxin_canalis; Auxin canalization
      pfam08458
      Location:282 → 380
      PH_2; Plant pleckstrin homology-like region
    Nucleotide Protein
    Heading Accession and Version

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