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    LOC4346207 uncharacterized LOC4346207 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346207, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4346207
    Gene description
    uncharacterized LOC4346207
    Locus tag
    OSNPB_080543600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0623F08.8; Os08g0543500; OJ1521_G02.33
    Expression
    Ubiquitous expression in flower buds (RPKM 14.5), roots before flowering (RPKM 13.8) and 6 other tissues See more
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    Genomic context

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    See LOC4346207 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27210323..27217043, complement)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene putrescine hydroxycinnamoyltransferase 1-like Neighboring gene putative disease resistance protein RGA3 Neighboring gene transcription factor bHLH14 Neighboring gene DNA polymerase delta subunit 4-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4346207
    Names
    Os08g0543600

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      27210323..27217043 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794595.2 → XP_015650081.1  uncharacterized protein LOC4346207 isoform X3

      UniProtKB/TrEMBL
      B8B9G1
      Conserved Domains (2) summary
      pfam15619
      Location:125 → 291
      Lebercilin; Ciliary protein causing Leber congenital amaurosis disease
      pfam16046
      Location:117 → 192
      FAM76; FAM76 protein

    2. XM_015794593.2 → XP_015650079.1  uncharacterized protein LOC4346207 isoform X1

      UniProtKB/TrEMBL
      B8B9G1, Q0J3Z9, Q6ZBI5
      Conserved Domains (1) summary
      TIGR02168
      Location:78 → 313
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    3. XM_015794594.2 → XP_015650080.1  uncharacterized protein LOC4346207 isoform X2

      UniProtKB/TrEMBL
      B8B9G1
      Conserved Domains (1) summary
      TIGR02168
      Location:78 → 313
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    RNA

    1. XR_003238276.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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