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    LOC4325492 uncharacterized LOC4325492 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325492, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4325492
    Gene description
    uncharacterized LOC4325492
    Locus tag
    OSNPB_010766200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 20.9), leaves before flowering (RPKM 12.9) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32881802..32883536, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32276494..32278391, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene zinc finger A20 and AN1 domain-containing stress-associated protein 3 Neighboring gene protein DETOXIFICATION 33 Neighboring gene uncharacterized LOC4325493 Neighboring gene uncharacterized LOC4325494

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-like protein conjugating enzyme binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4325492
    Names
    E3 ubiquitin-protein ligase RNF5
    OSJNBb0053G03.1
    Os01g0766200
    P0403C05.33
    putative RING finger protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      32881802..32883536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761469.3 → XP_015616955.1  uncharacterized protein LOC4325492

      UniProtKB/TrEMBL
      A0A5S6R7X3, A2WVF2, B7EGF4, Q0JJ10, Q5JN05, Q5ZAN7
      Conserved Domains (2) summary
      PLN03208
      Location:1 → 105
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd00162
      Location:26 → 69
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

    2. XM_015761549.3 → XP_015617035.1  uncharacterized protein LOC4325492

      UniProtKB/TrEMBL
      A0A5S6R7X3, A2WVF2, B7EGF4, Q0JJ10, Q5JN05, Q5ZAN7
      Conserved Domains (2) summary
      PLN03208
      Location:1 → 105
      PLN03208; E3 ubiquitin-protein ligase RMA2; Provisional
      cd00162
      Location:26 → 69
      RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    Nucleotide Protein
    Heading Accession and Version

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