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    LOC4324956 integrin-linked protein kinase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324956, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4324956
    Gene description
    integrin-linked protein kinase 1
    Locus tag
    OSNPB_010892800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 57.4), flower buds (RPKM 32.3) and 2 other tissues See more
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    Genomic context

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    See LOC4324956 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (39449189..39452668)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (38818692..38822165)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene pectin acetylesterase 5 Neighboring gene pectin acetylesterase 6 Neighboring gene uncharacterized LOC112937608 Neighboring gene uncharacterized LOC136354965

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    integrin-linked protein kinase 1
    Names
    B1078G07.25
    Os01g0892800
    probable serine/threonine-protein kinase DDB_G0267514
    putative ankyrin-kinase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      39449189..39452668
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015773439.2 → XP_015628925.1  integrin-linked protein kinase 1 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VBM0
      Conserved Domains (3) summary
      sd00045
      Location:109 → 140
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:82 → 172
      Ank_2; Ankyrin repeats (3 copies)
      cl21453
      Location:207 → 456
      PKc_like; Protein Kinases, catalytic domain

    2. XM_015773446.1 → XP_015628932.1  integrin-linked protein kinase 1 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VBK2, A0A0P0VBM0, B8A7E8, Q5JLW4
      Conserved Domains (3) summary
      sd00045
      Location:109 → 140
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:82 → 172
      Ank_2; Ankyrin repeats (3 copies)
      cl21453
      Location:207 → 456
      PKc_like; Protein Kinases, catalytic domain

    RNA

    1. XR_010738720.1 RNA Sequence

    2. XR_003240252.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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