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    LOC4324333 selenium-binding protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324333, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324333
    Gene description
    selenium-binding protein 1
    Locus tag
    OSNPB_010916400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    SBP; P0413C03.8
    Expression
    Ubiquitous expression in flowers (RPKM 143.0), flower buds (RPKM 130.1) and 6 other tissues See more
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    Genomic context

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    See LOC4324333 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (40582768..40586137)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39948053..39951521)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene AP-4 complex subunit epsilon Neighboring gene uncharacterized LOC4324332 Neighboring gene glycine-rich RNA-binding protein 4, mitochondrial Neighboring gene uncharacterized LOC4324335

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Enhanced resistance to blast fungus and bacterial blight in transgenic rice constitutively expressing OsSBP, a rice homologue of mammalian selenium-binding proteins. Sawada K, et al. Biosci Biotechnol Biochem, 2004 Apr. PMID 15118317
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables selenium binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    selenium-binding protein 1
    Names
    Os SBP
    Os01g0916400
    P0004D12.34
    putative selenium binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      40582768..40586137
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765800.3 → XP_015621286.1  selenium-binding protein 1

      UniProtKB/TrEMBL
      A0A0P0VC35, A0A8J8Y8E3, A2WYB3, A3A0W8, Q8RZW7, Q9AVA6
      Conserved Domains (1) summary
      pfam05694
      Location:15 → 482
      SBP56; 56kDa selenium binding protein (SBP56)
    Nucleotide Protein
    Heading Accession and Version

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