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    LOC4341328 probable phospholipid-transporting ATPase 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341328, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4341328
    Gene description
    probable phospholipid-transporting ATPase 4
    Locus tag
    OSNPB_060565900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0567G03.5
    Expression
    Broad expression in roots before flowering (RPKM 42.6), flowers (RPKM 33.6) and 5 other tissues See more
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    Genomic context

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    See LOC4341328 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (21808685..21815328)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene protein starmaker Neighboring gene protein FAR1-RELATED SEQUENCE 7-like Neighboring gene heterogeneous nuclear ribonucleoprotein 1 Neighboring gene zinc transporter 10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATPase-coupled intramembrane lipid transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables magnesium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phospholipid translocation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable phospholipid-transporting ATPase 4
    Names
    Os06g0565900
    P0513E02.24
    putative ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      21808685..21815328
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788267.2 → XP_015643753.1  probable phospholipid-transporting ATPase 4

      UniProtKB/TrEMBL
      B8B3T2, B9FTT7, Q5Z656
      Conserved Domains (5) summary
      TIGR01652
      Location:69 → 1165
      ATPase-Plipid; phospholipid-translocating P-type ATPase, flippase
      pfam13246
      Location:546 → 649
      Cation_ATPase; Cation transport ATPase (P-type)
      pfam16209
      Location:53 → 119
      PhoLip_ATPase_N; Phospholipid-translocating ATPase N-terminal
      pfam16212
      Location:909 → 1157
      PhoLip_ATPase_C; Phospholipid-translocating P-type ATPase C-terminal
      cl21460
      Location:859 → 909
      HAD_like; Haloacid Dehalogenase-like Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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