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    LOC4347996 probable helicase MAGATAMA 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347996, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4347996
    Gene description
    probable helicase MAGATAMA 3
    Locus tag
    OSNPB_100118900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 30.0), leaves after flowering (RPKM 24.8) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (1197589..1208680, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (1193227..1203183, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 2-like Neighboring gene probable ascorbate-specific transmembrane electron transporter 1 Neighboring gene probable leucine-rich repeat receptor-like protein kinase At1g35710 Neighboring gene uncharacterized LOC112936672

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable helicase MAGATAMA 3
    Names
    Os10g0118900
    probable helicase DDB_G0274399

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      1197589..1208680 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066304682.1 → XP_066160779.1  probable helicase MAGATAMA 3 isoform X2

      UniProtKB/TrEMBL
      B8BFH0

    2. XM_015758621.3 → XP_015614107.1  probable helicase MAGATAMA 3 isoform X1

      UniProtKB/TrEMBL
      B8BFH0
      Conserved Domains (2) summary
      cd18042
      Location:679 → 1064
      DEXXQc_SETX; DEXXQ-box helicase domain of SETX
      pfam13087
      Location:1041 → 1237
      AAA_12; AAA domain

    3. XM_026020850.2 → XP_025876635.1  probable helicase MAGATAMA 3 isoform X2

      UniProtKB/TrEMBL
      B8BFH0
      Conserved Domains (2) summary
      pfam13087
      Location:1040 → 1236
      AAA_12; AAA domain
      cl26261
      Location:562 → 1255
      AAA_11; AAA domain

    RNA

    1. XR_010736963.1 RNA Sequence

    2. XR_010736957.1 RNA Sequence

    3. XR_010736960.1 RNA Sequence

    4. XR_010736959.1 RNA Sequence

    5. XR_010736962.1 RNA Sequence

    6. XR_010736958.1 RNA Sequence

    7. XR_010736961.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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