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    LOC4327980 GDSL esterase/lipase EXL3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327980, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327980
    Gene description
    GDSL esterase/lipase EXL3
    Locus tag
    OSNPB_020101400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1435_F07.7
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    Genomic context

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    See LOC4327980 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (84401..86365)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (78124..79546)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene amino acid transporter AVT1C Neighboring gene translation initiation factor IF3-1, mitochondrial Neighboring gene glycerate dehydrogenase Neighboring gene SKP1-like protein 1 Neighboring gene E3 ubiquitin-protein ligase UPL3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GDSL esterase/lipase EXL3
    Names
    B1370C05.17
    Os02g0101400
    putative family II extracellular lipase 3 (EXL3)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      84401..86365
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769683.3 → XP_015625169.1  GDSL esterase/lipase EXL3

      UniProtKB/TrEMBL
      A2WZR3, A3A250
      Conserved Domains (1) summary
      cd01837
      Location:33 → 352
      SGNH_plant_lipase_like; a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its ...
    Nucleotide Protein
    Heading Accession and Version

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