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    LOC4338850 F-box protein SKP2A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338850, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4338850
    Gene description
    F-box protein SKP2A
    Locus tag
    OSNPB_050425700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 81.3), flowers (RPKM 42.8) and 6 other tissues See more
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    Genomic context

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    See LOC4338850 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (20952450..20956370)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (20848454..20851098)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356552 Neighboring gene uncharacterized LOC136356677 Neighboring gene bidirectional sugar transporter SWEET1b-like Neighboring gene uncharacterized LOC107278075 Neighboring gene putative clathrin assembly protein At1g03050

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of SCF ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box protein SKP2A
    Names
    F-box domain and LRR containing protein
    Os05g0425700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      20952450..20956370
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026025660.2 → XP_025881445.1  F-box protein SKP2A

      UniProtKB/TrEMBL
      A0A0P0WMN0, A2Y4V4, Q0DI11, Q60EC4
      Conserved Domains (2) summary
      cd09293
      Location:89 → 278
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:80 → 105
      LRR_AMN1; leucine-rich repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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