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    LOC4325503 BTB/POZ domain and ankyrin repeat-containing protein NPR2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325503, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4325503
    Gene description
    BTB/POZ domain and ankyrin repeat-containing protein NPR2-like
    Locus tag
    OSNPB_010767900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    NH2; NPR1; NPR2; OsNH2; OsNPR2
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 96.0), leaves after flowering (RPKM 69.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (32973348..32976968)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (32367736..32371814)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene protein TUNICAMYCIN INDUCED 1 Neighboring gene DExH-box ATP-dependent RNA helicase DExH6 Neighboring gene uncharacterized LOC4325504 Neighboring gene uncharacterized LOC4325505

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to bacterium IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in defense response to fungus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of jasmonic acid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of salicylic acid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in systemic acquired resistance, salicylic acid mediated signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    BTB/POZ domain and ankyrin repeat-containing protein NPR2
    Names
    B1143G03.10
    Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Ankyrin repeat region BTBA2
    LOC_Os01g56200
    NPR1 homolog 2
    OSJNBb0053G03.24
    Os01g0767900
    ankyrin-repeat protein
    bTB/POZ domain and ankyrin repeat-containing protein NPR2
    putative NPR1
    putative NPR1-like protein 1
    regulatory protein NPR3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001397722.1 → NP_001384651.1  BTB/POZ domain and ankyrin repeat-containing protein NPR2

      Status: VALIDATED

      Source sequence(s)
      AP014957, CB639248, CI122910, DQ450949
      UniProtKB/Swiss-Prot
      Q0JJ01, Q5D0W7, Q5ZAN8
      UniProtKB/TrEMBL
      B8AA73
      Conserved Domains (5) summary
      sd00045
      Location:349 → 378
      ANK; ANK repeat [structural motif]
      pfam11900
      Location:276 → 323
      DUF3420; Domain of unknown function (DUF3420)
      cd18310
      Location:79 → 241
      BTB_POZ_NPR_plant; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in plant regulatory proteins, NPR1-4, and similar proteins
      pfam12313
      Location:422 → 614
      NPR1_like_C; NPR1/NIM1 like defense protein C terminal
      pfam12796
      Location:322 → 405
      Ank_2; Ankyrin repeats (3 copies)

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      32973348..32976968
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0JJ01.1 GenPept UniProtKB/Swiss-Prot:Q0JJ01

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