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    LOC4345254 heterogeneous nuclear ribonucleoprotein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345254, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4345254
    Gene description
    heterogeneous nuclear ribonucleoprotein 1
    Locus tag
    OSNPB_080320100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1136_D12.118
    Expression
    Ubiquitous expression in roots after flowering (RPKM 39.9), leaves after flowering (RPKM 37.7) and 6 other tissues See more
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    Genomic context

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    See LOC4345254 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (13997920..14002017)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (13930442..13934687)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene cyclase-like protein 3 Neighboring gene tyrosine--tRNA ligase 1, cytoplasmic Neighboring gene oligopeptide transporter 1 Neighboring gene uncharacterized LOC4345256

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterogeneous nuclear ribonucleoprotein 1
    Names
    Os08g0320100
    P0465H09.135
    RNA recognition motif (RRM)-containing protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      13997920..14002017
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795515.3 → XP_015651001.1  heterogeneous nuclear ribonucleoprotein 1

      UniProtKB/TrEMBL
      B8B9P9, Q6Z0P6, Q6ZCL1
      Conserved Domains (1) summary
      cl17169
      Location:104 → 183
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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