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    LOC4337973 E3 ubiquitin-protein ligase At1g63170 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337973, updated on 21-Jun-2023

    Summary

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    Gene symbol
    LOC4337973
    Gene description
    E3 ubiquitin-protein ligase At1g63170
    Locus tag
    OSNPB_050179000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 29.6), roots after flowering (RPKM 26.9) and 6 other tissues See more
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    Genomic context

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    See LOC4337973 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (4710551..4715460)

    Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene auxin-responsive protein IAA15-like Neighboring gene pre-mRNA splicing factor SR-like 1 Neighboring gene uncharacterized LOC4337974 Neighboring gene acyl transferase 7-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    E3 ubiquitin-protein ligase At1g63170
    Names
    Os05g0179000

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

      Range
      4710551..4715460
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785101.2 → XP_015640587.1  E3 ubiquitin-protein ligase At1g63170

      UniProtKB/TrEMBL
      A0A0P0WIL7, A0A8J8YLK5, B8AYN4, B9FMS8, Q0DKA7
      Conserved Domains (1) summary
      cd16474
      Location:333 → 375
      RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

    2. XM_015785099.2 → XP_015640585.1  E3 ubiquitin-protein ligase At1g63170

      UniProtKB/TrEMBL
      A0A0P0WIL7, A0A8J8YLK5, B8AYN4, B9FMS8, Q0DKA7
      Conserved Domains (1) summary
      cd16474
      Location:333 → 375
      RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

    3. XM_015785103.2 → XP_015640589.1  E3 ubiquitin-protein ligase At1g63170

      UniProtKB/TrEMBL
      A0A0P0WIL7, A0A8J8YLK5, B8AYN4, B9FMS8, Q0DKA7
      Conserved Domains (1) summary
      cd16474
      Location:333 → 375
      RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

    4. XM_026025690.1 → XP_025881475.1  E3 ubiquitin-protein ligase At1g63170

      UniProtKB/TrEMBL
      A0A0P0WIL7, A0A8J8YLK5, B8AYN4, B9FMS8, Q0DKA7
      Conserved Domains (1) summary
      cd16474
      Location:333 → 375
      RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

    5. XM_015785100.2 → XP_015640586.1  E3 ubiquitin-protein ligase At1g63170

      UniProtKB/TrEMBL
      A0A0P0WIL7, A0A8J8YLK5, B8AYN4, B9FMS8, Q0DKA7
      Conserved Domains (1) summary
      cd16474
      Location:333 → 375
      RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

    6. XM_015785098.2 → XP_015640584.1  E3 ubiquitin-protein ligase At1g63170

      UniProtKB/TrEMBL
      A0A0P0WIL7, A0A8J8YLK5, B8AYN4, B9FMS8, Q0DKA7
      Conserved Domains (1) summary
      cd16474
      Location:333 → 375
      RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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