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    LOC4336518 protein YABBY 5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336518, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4336518
    Gene description
    protein YABBY 5-like
    Locus tag
    OSNPB_040536300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    YAB5; OsYAB3; OsYABBY5; OsJ_014945
    Expression
    Biased expression in flowers (RPKM 3.9), flower buds (RPKM 2.1) and 1 other tissue See more
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    Genomic context

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    See LOC4336518 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (26797676..26800429, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene bifunctional adenosine 5'-phosphosulfate phosphorylase/adenylylsulfatase HINT4 Neighboring gene beta-fructofuranosidase 1 Neighboring gene NAC domain-containing protein 7 Neighboring gene auxin-responsive protein SAUR36

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Molecular characterization the YABBY gene family in Oryza sativa and expression analysis of OsYABBY1. Toriba T, et al. Mol Genet Genomics, 2007 May. PMID 17216490
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in abaxial cell fate specification IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cell fate commitment IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in fruit development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in multicellular organism development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in polarity specification of adaxial/abaxial axis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of leaf development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of shoot apical meristem development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein YABBY 5
    Names
    LOC_Os04g45330
    OSJNBb0020O11.2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001419713.1 → NP_001406642.1  protein YABBY 5

      Status: VALIDATED

      Source sequence(s)
      AB274017, CI591065
      UniProtKB/Swiss-Prot
      A2XVW7, A3AVX3, B7EHI2, Q01JG2, Q0JBF0, Q7XU66

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      26797676..26800429 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015779110.2 → XP_015634596.1  protein YABBY 5

      UniProtKB/Swiss-Prot
      Q0JBF0
      Conserved Domains (1) summary
      pfam04690
      Location:26 → 218
      YABBY; YABBY protein
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0JBF0.1 GenPept UniProtKB/Swiss-Prot:Q0JBF0

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