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    LOC4335926 protein TIC 40, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335926, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4335926
    Gene description
    protein TIC 40, chloroplastic
    Locus tag
    OSNPB_040439900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 65.1), leaves after flowering (RPKM 64.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22287056..22292850, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (21887017..21892982, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4335923 Neighboring gene uncharacterized LOC4335924 Neighboring gene serine/threonine-protein kinase-like protein CCR4 Neighboring gene uncharacterized LOC4335927 Neighboring gene regulator of nonsense transcripts UPF3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in chloroplast organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein import into chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein TIC 40, chloroplastic
    Names
    Os04g0439900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      22287056..22292850 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781502.3 → XP_015636988.1  protein TIC 40, chloroplastic

      UniProtKB/TrEMBL
      B8AU34, B9FFC1, Q01K76, Q0JD02, Q7XQG5
      Conserved Domains (2) summary
      pfam16550
      Location:280 → 326
      RPN13_C; UCH-binding domain
      pfam17830
      Location:368 → 420
      STI1; STI1 domain
    Nucleotide Protein
    Heading Accession and Version

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