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    LOC4341545 putative disease resistance protein At3g14460 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341545, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4341545
    Gene description
    putative disease resistance protein At3g14460
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 3.3), roots after flowering (RPKM 2.7) and 6 other tissues See more
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    Genomic context

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    See LOC4341545 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (25792335..25798528, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (24929901..24936231, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4341544 Neighboring gene uncharacterized LOC107281308 Neighboring gene putative disease resistance protein RGA3 Neighboring gene putative disease resistance protein RGA3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative disease resistance protein At3g14460; putative disease resistance protein RGA4
    Names
    P0040H10.15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      25792335..25798528 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026026490.2 → XP_025882275.1  putative disease resistance protein RGA4 isoform X1

      UniProtKB/TrEMBL
      A3BDM7, Q69XW6
      Conserved Domains (3) summary
      pfam00931
      Location:181 → 475
      NB-ARC; NB-ARC domain
      cl26396
      Location:71 → 141
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      cl27891
      Location:991 → 1068
      LRR_3; Leucine Rich Repeat

    2. XM_015788963.3 → XP_015644449.1  putative disease resistance protein RGA4 isoform X1

      UniProtKB/TrEMBL
      A3BDM7, Q69XW6
      Conserved Domains (3) summary
      pfam00931
      Location:181 → 475
      NB-ARC; NB-ARC domain
      cl26396
      Location:71 → 141
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      cl27891
      Location:991 → 1068
      LRR_3; Leucine Rich Repeat

    3. XM_026026488.2 → XP_025882273.1  putative disease resistance protein RGA4 isoform X1

      UniProtKB/TrEMBL
      A3BDM7, Q69XW6
      Conserved Domains (3) summary
      pfam00931
      Location:181 → 475
      NB-ARC; NB-ARC domain
      cl26396
      Location:71 → 141
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      cl27891
      Location:991 → 1068
      LRR_3; Leucine Rich Repeat

    4. XM_026026491.2 → XP_025882276.1  putative disease resistance protein At3g14460 isoform X3

      Conserved Domains (2) summary
      pfam00931
      Location:181 → 475
      NB-ARC; NB-ARC domain
      cl26396
      Location:71 → 141
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins

    5. XM_066311663.1 → XP_066167760.1  putative disease resistance protein RGA4 isoform X2

    Nucleotide Protein
    Heading Accession and Version

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