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    LOC4340169 putative lipase C4A8.10 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340169, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340169
    Gene description
    putative lipase C4A8.10
    Locus tag
    OSNPB_060154400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 7.5), flower buds (RPKM 6.7) and 6 other tissues See more
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    Genomic context

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    See LOC4340169 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (2963099..2966499)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (2802847..2806261)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene probable thiol methyltransferase 2 Neighboring gene F-box/LRR-repeat MAX2 homolog Neighboring gene mitogen-activated protein kinase 1-like Neighboring gene dihydroneopterin aldolase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in cellular lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative lipase C4A8.10; putative lipase YDR444W
    Names
    Os06g0154400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      2963099..2966499
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787705.3 → XP_015643191.1  putative lipase C4A8.10 isoform X2

      UniProtKB/TrEMBL
      B8B2Z8
      Conserved Domains (1) summary
      pfam05057
      Location:75 → 307
      DUF676; Putative serine esterase (DUF676)

    2. XM_015787704.3 → XP_015643190.1  putative lipase YDR444W isoform X1

      UniProtKB/TrEMBL
      B8B2Z8, B9FRK0
      Conserved Domains (1) summary
      pfam05057
      Location:75 → 307
      DUF676; Putative serine esterase (DUF676)

    3. XM_015787706.3 → XP_015643192.1  putative lipase C4A8.10 isoform X3

      UniProtKB/TrEMBL
      B8B2Z8
      Conserved Domains (1) summary
      pfam05057
      Location:40 → 272
      DUF676; Putative serine esterase (DUF676)
    Nucleotide Protein
    Heading Accession and Version

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