LOC4342138 protein argonaute 1D-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4342138
Gene description: protein argonaute 1D-like
Locus tag: OSNPB_060729300
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: AGO1D; OsAGO1d
Expression: Broad expression in flowers (RPKM 67.4), flower buds (RPKM 48.7) and 5 other tissues See more
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Genomic context

Location:: chromosome: 6

Exon count:: 23

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	6	NC_029261.1 (31069081..31077381)

Chromosome 6 - NC_029261.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulatory ncRNA-mediated post-transcriptional gene silencing	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: protein argonaute 1D

Names: LOC_Os06g51310; OSJNBa0069C14.10-1; OSJNBa0069C14.10-2; putative AGO1 homologous protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001402967.1 → NP_001389896.1 protein argonaute 1D

Status: VALIDATED

Source sequence(s)

AK111500, AK122176, CI079194, CI396034

UniProtKB/Swiss-Prot

A0A0P0X188, Q5Z5B2

UniProtKB/TrEMBL

B9FR04

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029261.1 Reference IRGSP-1.0 Primary Assembly

Range

31069081..31077381

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015787025.2 → XP_015642511.1 protein argonaute 1D

UniProtKB/Swiss-Prot

Q5Z5B2

Conserved Domains (6) summary

PLN03202
Location:174 → 1038

PLN03202; protein argonaute; Provisional

cd02846
Location:378 → 492

PAZ_argonaute_like; PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. ...

cd04657
Location:537 → 989

Piwi_ago-like; Piwi_ago-like: PIWI domain, Argonaute-like subfamily. Argonaute is the central component of the RNA-induced silencing complex (RISC) and related complexes. The PIWI domain is the C-terminal portion of Argonaute and consists of two subdomains, one of ...

pfam08699
Location:329 → 377

ArgoL1; Argonaute linker 1 domain

pfam12764
Location:91 → 155

Gly-rich_Ago1; Glycine-rich region of argonaut

pfam16486
Location:174 → 317

ArgoN; N-terminal domain of argonaute