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    LOC9267129 phosphatidylinositol 4-kinase beta 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9267129, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9267129
    Gene description
    phosphatidylinositol 4-kinase beta 1
    Locus tag
    OSNPB_110209700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 19.3), leaves after flowering (RPKM 16.7) and 6 other tissues See more
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    Genomic context

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    See LOC9267129 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (5709331..5719654, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (5653220..5663612, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein At3g59200-like Neighboring gene putative F-box protein At3g58860 Neighboring gene uncharacterized LOC4350049 Neighboring gene uncharacterized LOC4350050

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1-phosphatidylinositol 4-kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phosphatidylinositol phosphate biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in phosphatidylinositol-mediated signaling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phosphatidylinositol 4-kinase beta 1
    Names
    Os11g0209700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      5709331..5719654 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761640.3 → XP_015617126.1  phosphatidylinositol 4-kinase beta 1

      UniProtKB/TrEMBL
      B9V0M5, Q9LLP5
      Conserved Domains (2) summary
      cd05168
      Location:918 → 1208
      PI4Kc_III_beta; Catalytic domain of Type III Phosphoinositide 4-kinase beta
      pfam05793
      Location:304 → 615
      TFIIF_alpha; Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
    Nucleotide Protein
    Heading Accession and Version

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