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    LOC4344624 mavicyanin [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344624, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344624
    Gene description
    mavicyanin
    Locus tag
    OSNPB_080137800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1119_D01.1; OJ1613_G04.29
    Expression
    Restricted expression toward roots before flowering (RPKM 545.4) See more
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    Genomic context

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    See LOC4344624 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (2141886..2142871)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (2129600..2130601)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351346 Neighboring gene uncharacterized LOC107278408 Neighboring gene mavicyanin Neighboring gene mavicyanin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables electron transfer activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    mavicyanin
    Names
    Os08g0137800
    putative blue copper binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      2141886..2142871
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793387.3 → XP_015648873.1  mavicyanin

      UniProtKB/TrEMBL
      A0A0P0XCD1, Q0J844, Q6ZJW3
      Conserved Domains (2) summary
      PHA03378
      Location:132 → 171
      PHA03378; EBNA-3B; Provisional
      cd04216
      Location:25 → 123
      Phytocyanin; Phytocyanins are plant blue or type I copper proteins
    Nucleotide Protein
    Heading Accession and Version

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