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    LOC4336344 uncharacterized LOC4336344 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336344, updated on 10-Oct-2024

    Summary

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    Gene symbol
    LOC4336344
    Gene description
    uncharacterized LOC4336344
    Locus tag
    OSNPB_040506900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4336344 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (25815063..25821157, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (25314343..25320579, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 Neighboring gene sialyltransferase-like protein 3 Neighboring gene DNA mismatch repair protein MSH1, mitochondrial Neighboring gene protein LOW PSII ACCUMULATION 1, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4336344
    Names
    Os04g0506900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      25815063..25821157 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309904.1 → XP_066166001.1  uncharacterized protein LOC4336344 isoform X10

    2. XM_026024866.2 → XP_025880651.1  uncharacterized protein LOC4336344 isoform X5

      UniProtKB/TrEMBL
      Q7F954, Q7X6N5
      Conserved Domains (3) summary
      pfam12552
      Location:145 → 189
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:714 → 880
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:37 → 55
      VARLMGL; DUF761-associated sequence motif

    3. XM_066309896.1 → XP_066165993.1  uncharacterized protein LOC4336344 isoform X4

    4. XM_066309895.1 → XP_066165992.1  uncharacterized protein LOC4336344 isoform X3

    5. XM_066309893.1 → XP_066165990.1  uncharacterized protein LOC4336344 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WCK6, A0A8J8Y5Q9, B9FG16

    6. XM_015781590.3 → XP_015637076.1  uncharacterized protein LOC4336344 isoform X1

      UniProtKB/TrEMBL
      B8ARD5
      Conserved Domains (3) summary
      pfam12552
      Location:184 → 227
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:752 → 919
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:72 → 94
      VARLMGL; DUF761-associated sequence motif

    7. XM_066309901.1 → XP_066165998.1  uncharacterized protein LOC4336344 isoform X7

    8. XM_015781600.3 → XP_015637086.1  uncharacterized protein LOC4336344 isoform X8

      UniProtKB/TrEMBL
      Q0JBW3, Q7F954, Q7X6N5
      Conserved Domains (3) summary
      pfam12552
      Location:126 → 170
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:694 → 860
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:18 → 36
      VARLMGL; DUF761-associated sequence motif

    9. XM_066309900.1 → XP_066165997.1  uncharacterized protein LOC4336344 isoform X7

    10. XM_066309902.1 → XP_066165999.1  uncharacterized protein LOC4336344 isoform X8

      UniProtKB/TrEMBL
      Q0JBW3

    11. XM_066309894.1 → XP_066165991.1  uncharacterized protein LOC4336344 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WCK6, A0A8J8Y5Q9, B9FG16

    12. XM_066309898.1 → XP_066165995.1  uncharacterized protein LOC4336344 isoform X4

    13. XM_026024865.2 → XP_025880650.1  uncharacterized protein LOC4336344 isoform X5

      UniProtKB/TrEMBL
      Q7F954, Q7X6N5
      Conserved Domains (3) summary
      pfam12552
      Location:145 → 189
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:714 → 880
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:37 → 55
      VARLMGL; DUF761-associated sequence motif

    14. XM_015781594.3 → XP_015637080.1  uncharacterized protein LOC4336344 isoform X2

      UniProtKB/TrEMBL
      A0A0P0WCK6, A0A8J8Y5Q9, B8ARD5, B9FG16
      Conserved Domains (3) summary
      pfam12552
      Location:184 → 227
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:751 → 918
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:72 → 94
      VARLMGL; DUF761-associated sequence motif

    15. XM_015781589.3 → XP_015637075.1  uncharacterized protein LOC4336344 isoform X1

      UniProtKB/TrEMBL
      B8ARD5
      Conserved Domains (3) summary
      pfam12552
      Location:184 → 227
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:752 → 919
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:72 → 94
      VARLMGL; DUF761-associated sequence motif

    16. XM_066309903.1 → XP_066166000.1  uncharacterized protein LOC4336344 isoform X9

    17. XM_015781588.3 → XP_015637074.1  uncharacterized protein LOC4336344 isoform X1

      UniProtKB/TrEMBL
      B8ARD5
      Conserved Domains (3) summary
      pfam12552
      Location:184 → 227
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:752 → 919
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:72 → 94
      VARLMGL; DUF761-associated sequence motif

    18. XM_066309892.1 → XP_066165989.1  uncharacterized protein LOC4336344 isoform X1

    19. XM_015781585.3 → XP_015637071.1  uncharacterized protein LOC4336344 isoform X1

      UniProtKB/TrEMBL
      B8ARD5
      Conserved Domains (3) summary
      pfam12552
      Location:184 → 227
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:752 → 919
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:72 → 94
      VARLMGL; DUF761-associated sequence motif

    20. XM_015781584.3 → XP_015637070.1  uncharacterized protein LOC4336344 isoform X1

      UniProtKB/TrEMBL
      B8ARD5
      Conserved Domains (3) summary
      pfam12552
      Location:184 → 227
      DUF3741; Protein of unknown function (DUF3741)
      pfam14309
      Location:752 → 919
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:72 → 94
      VARLMGL; DUF761-associated sequence motif

    21. XM_066309899.1 → XP_066165996.1  uncharacterized protein LOC4336344 isoform X6

    Nucleotide Protein
    Heading Accession and Version

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