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    LOC4332670 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332670, updated on 25-Jan-2024

    Summary

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    Gene symbol
    LOC4332670
    Gene description
    histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3
    Locus tag
    OSNPB_030320400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LOC4332670 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (11559997..11562564)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene aquaporin SIP2-1-like Neighboring gene alpha-L-arabinofuranosidase 1-like Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene calmodulin-binding protein 25 Neighboring gene probable inactive receptor kinase At5g10020

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables histone methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3
    Names
    Os03g0320400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      11559997..11562564
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774722.2 → XP_015630208.1  histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3

      UniProtKB/TrEMBL
      B8ANG8, Q0DSC2, Q10M77
      Conserved Domains (2) summary
      cl40432
      Location:371 → 517
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily
      pfam02182
      Location:171 → 315
      SAD_SRA; SAD/SRA domain
    Nucleotide Protein
    Heading Accession and Version

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