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    LOC4344600 plant cysteine oxidase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344600, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4344600
    Gene description
    plant cysteine oxidase 3
    Locus tag
    OSNPB_080133000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 26.8), mature seeds (RPKM 25.2) and 6 other tissues See more
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    Genomic context

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    See LOC4344600 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (1843868..1846213)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4344598 Neighboring gene uncharacterized LOC107281847 Neighboring gene uncharacterized LOC4344602 Neighboring gene plant cysteine oxidase 3

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    plant cysteine oxidase 3
    Names
    OSJNBb0009H02.39
    Os08g0133000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      1843868..1846213
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793137.2 → XP_015648623.1  plant cysteine oxidase 3 isoform X2

      UniProtKB/TrEMBL
      A2YQY6
      Conserved Domains (1) summary
      pfam07847
      Location:56 → 264
      DUF1637; Protein of unknown function (DUF1637)

    2. XM_015793136.2 → XP_015648622.1  plant cysteine oxidase 3 isoform X1

      UniProtKB/TrEMBL
      A2YQY6, B9FYX8, Q69R46
      Conserved Domains (1) summary
      pfam07847
      Location:56 → 265
      PCO_ADO
    Nucleotide Protein
    Heading Accession and Version

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