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    LOC4335540 uncharacterized LOC4335540 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335540, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4335540
    Gene description
    uncharacterized LOC4335540
    Locus tag
    OSNPB_040348000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 17.6), leaves after flowering (RPKM 16.2) and 6 other tissues See more
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    Genomic context

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    See LOC4335540 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (16561933..16566465)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene protein PRD1 Neighboring gene uncharacterized LOC4335539 Neighboring gene protein CMSS1 Neighboring gene cell division cycle 5-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4335540
    Names
    Os04g0348000

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      16561933..16566465
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781746.2 → XP_015637232.1  uncharacterized protein LOC4335540 isoform X1

      UniProtKB/TrEMBL
      Q01LK1

    2. XM_015781747.2 → XP_015637233.1  uncharacterized protein LOC4335540 isoform X2

      UniProtKB/TrEMBL
      B8ASH4, B9FEJ9, Q01LK1, Q7XS72
    Nucleotide Protein
    Heading Accession and Version

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