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    LOC4348392 anti-sigma-I factor RsgI6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348392, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4348392
    Gene description
    anti-sigma-I factor RsgI6
    Locus tag
    OSNPB_100351700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Restricted expression toward flowers (RPKM 190.9) See more
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    Genomic context

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    See LOC4348392 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (10727317..10730893)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene probably inactive receptor-like protein kinase At2g46850 Neighboring gene anti-sigma-I factor RsgI6 Neighboring gene uncharacterized LOC4348394 Neighboring gene uncharacterized LOC4348395

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4348392
    Names
    Os10g0351700
    endo-1,4-beta-xylanase A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      10727317..10730893
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757924.1 → XP_015613410.1  uncharacterized protein LOC4348392

      UniProtKB/TrEMBL
      A0A0P0XT95, B8BGE2, Q0IY86, Q7XFF8
      Conserved Domains (1) summary
      smart00633
      Location:265 → 512
      Glyco_10; Glycosyl hydrolase family 10
    Nucleotide Protein
    Heading Accession and Version

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