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    LOC4333161 chaperone protein ClpB2, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333161, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4333161
    Gene description
    chaperone protein ClpB2, chloroplastic-like
    Locus tag
    OSNPB_030426900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CLPB2; CLPB-C
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 31.9), roots after flowering (RPKM 25.9) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (18288329..18295176)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (17832189..17839239)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280422 Neighboring gene membrane-anchored ubiquitin-fold protein 1-like Neighboring gene EID1-like F-box protein 2 Neighboring gene uncharacterized LOC4333163

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cellular response to heat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein refolding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chaperone protein ClpB2, chloroplastic
    Names
    ATP-dependent Clp protease ATP-binding subunit ClpB homolog 2
    Casein lytic proteinase B2
    LOC_Os03g31300
    OSJNBa0020H02.1
    OSJNBa0083F15.25

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417850.1 → NP_001404779.1  chaperone protein ClpB2, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK069123
      UniProtKB/Swiss-Prot
      A0A0P0VZN5, Q75GT3, Q75I57
      UniProtKB/TrEMBL
      B8AKD9

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      18288329..18295176
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q75GT3.1 GenPept UniProtKB/Swiss-Prot:Q75GT3

    Gene LinkOut

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