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    LOC4330568 enhancer of mRNA-decapping protein 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330568, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4330568
    Gene description
    enhancer of mRNA-decapping protein 4
    Locus tag
    OSNPB_020722800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0685G12.5
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    Genomic context

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    See LOC4330568 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (30507902..30517634, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30015996..30025930, complement)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278234 Neighboring gene KH domain-containing protein At5g56140 Neighboring gene uncharacterized LOC107279931 Neighboring gene probable glycosyltransferase 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in deadenylation-independent decapping of nuclear-transcribed mRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    enhancer of mRNA-decapping protein 4
    Names
    Os02g0722800
    P0654B04.36
    WD domain, G-beta repeat domain-containing protein
    transducin / WD-40 repeat protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      30507902..30517634 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770682.3 → XP_015626168.1  enhancer of mRNA-decapping protein 4

      UniProtKB/TrEMBL
      A0A0P0VP77, B9F2F8, Q6Z5M6
      Conserved Domains (3) summary
      PLN02550
      Location:109 → 192
      PLN02550; threonine dehydratase
      sd00039
      Location:205 → 250
      7WD40; WD40 repeat [structural motif]
      pfam16529
      Location:201 → 509
      Ge1_WD40; WD40 region of Ge1, enhancer of mRNA-decapping protein
    Nucleotide Protein
    Heading Accession and Version

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