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    LOC4340450 uncharacterized LOC4340450 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340450, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4340450
    Gene description
    uncharacterized LOC4340450
    Locus tag
    OSNPB_060209300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 52.8), roots after flowering (RPKM 51.2) and 6 other tissues See more
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    Genomic context

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    See LOC4340450 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (5742717..5752039, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (5575867..5585334, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene lysM domain-containing GPI-anchored protein LYP6-like Neighboring gene aspartic proteinase nepenthesin-1 Neighboring gene uncharacterized LOC4340451 Neighboring gene STOREKEEPER protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4340450
    Names
    Os06g0209300
    P0664C05.30-1
    P0664C05.30-2
    PHD finger protein-like
    zinc-finger protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      5742717..5752039 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787775.3 → XP_015643261.1  uncharacterized protein LOC4340450 isoform X1

      UniProtKB/TrEMBL
      B9FS44
      Conserved Domains (2) summary
      pfam13832
      Location:260 → 381
      zf-HC5HC2H_2; PHD-zinc-finger like domain
      cl22851
      Location:194 → 239
      PHD_SF; PHD finger superfamily

    2. XM_015787777.3 → XP_015643263.1  uncharacterized protein LOC4340450 isoform X2

      UniProtKB/TrEMBL
      Q0DDQ2, Q69T46
      Conserved Domains (2) summary
      pfam13831
      Location:182 → 214
      PHD_2; PHD-finger
      pfam13832
      Location:238 → 344
      zf-HC5HC2H_2; PHD-zinc-finger like domain
    Nucleotide Protein
    Heading Accession and Version

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