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    LOC4344270 tyrosine--tRNA ligase 1, cytoplasmic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344270, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4344270
    Gene description
    tyrosine--tRNA ligase 1, cytoplasmic
    Locus tag
    OSNPB_070675400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 21.4), flowers (RPKM 18.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28818504..28826977, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28584743..28593361, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357148 Neighboring gene uncharacterized LOC9270854 Neighboring gene uncharacterized LOC9268275 Neighboring gene uncharacterized LOC107276478 Neighboring gene transcription factor SCREAM2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tyrosine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tyrosyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tyrosine--tRNA ligase 1, cytoplasmic
    Names
    Os07g0675400
    P0037D09.29
    P0618H09.27
    putative tyrosyl-tRNA synthetase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      28818504..28826977 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792034.3 → XP_015647520.1  tyrosine--tRNA ligase 1, cytoplasmic isoform X4

      UniProtKB/TrEMBL
      Q69J79, Q6ZDW3
      Conserved Domains (1) summary
      cl00015
      Location:19 → 279
      nt_trans; nucleotidyl transferase superfamily

    2. XM_015792033.3 → XP_015647519.1  tyrosine--tRNA ligase 1, cytoplasmic isoform X2

      UniProtKB/TrEMBL
      B8B5V4
      Conserved Domains (1) summary
      cl00015
      Location:69 → 414
      nt_trans; nucleotidyl transferase superfamily

    3. XM_015792032.3 → XP_015647518.1  tyrosine--tRNA ligase 1, cytoplasmic isoform X1

      UniProtKB/TrEMBL
      B8B5V4
      Conserved Domains (1) summary
      cl00015
      Location:69 → 417
      nt_trans; nucleotidyl transferase superfamily

    4. XM_015792035.3 → XP_015647521.1  tyrosine--tRNA ligase 1, cytoplasmic isoform X4

      UniProtKB/TrEMBL
      Q69J79, Q6ZDW3
      Conserved Domains (1) summary
      cl00015
      Location:19 → 279
      nt_trans; nucleotidyl transferase superfamily

    5. XM_066312496.1 → XP_066168593.1  tyrosine--tRNA ligase 1, cytoplasmic isoform X3

    Nucleotide Protein
    Heading Accession and Version

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