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    LOC4326904 protein ZINC INDUCED FACILITATOR-LIKE 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326904, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4326904
    Gene description
    protein ZINC INDUCED FACILITATOR-LIKE 1
    Locus tag
    OSNPB_010279400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    mfs1; P0003H10.5; P0003H10.7
    Expression
    Biased expression in leaves before flowering (RPKM 73.1), roots after flowering (RPKM 58.7) and 3 other tissues See more
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    Genomic context

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    See LOC4326904 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (9902664..9915842, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (9889545..9908934, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene COP9 signalosome complex subunit 2 Neighboring gene calmodulin-3-like Neighboring gene probable anion transporter 1, chloroplastic Neighboring gene transcription factor TGA2.3-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. A maize defense-inducible gene is a major facilitator superfamily member related to bacterial multidrug resistance efflux antiporters. Simmons CR, et al. Plant Mol Biol, 2003 May. PMID 12856948
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ZINC INDUCED FACILITATOR-LIKE 1
    Names
    OSJNBa0036E02.1
    Os01g0279400
    major facilitator superfamily antiporter
    putative major facilitator superfamily antiporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001408982.1 → NP_001395911.1  protein ZINC INDUCED FACILITATOR-LIKE 1

      Status: VALIDATED

      Source sequence(s)
      AF543418
      UniProtKB/TrEMBL
      Q5NBS2, Q8H6D6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      9902664..9915842 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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