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    LOC4324650 jasmonoyl--L-amino acid synthetase GH3.3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324650, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4324650
    Gene description
    jasmonoyl--L-amino acid synthetase GH3.3-like
    Locus tag
    OSNPB_010221100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    JAR2; GH3.3; OsJAR2; OsGH3-3
    Expression
    Ubiquitous expression in roots after flowering (RPKM 11.0), roots before flowering (RPKM 10.4) and 6 other tissues See more
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    Genomic context

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    See LOC4324650 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (6634487..6640438, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (6624499..6630572, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937656 Neighboring gene bidirectional sugar transporter SWEET3b Neighboring gene uncharacterized LOC4324651 Neighboring gene uncharacterized LOC9272458

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables acid-amino acid ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    jasmonoyl--L-amino acid synthetase GH3.3
    Names
    Auxin-responsive GH3-like protein 3
    Indole-3-acetic acid-amido synthetase GH3.3
    Jasmonate-amino acid synthetase JAR1
    Jasmonate-amino acid synthetase JAR2
    Jasmonoyl--L-amino acid synthetase GH3.3
    LOC_Os01g12160
    P0483F08.33-1
    Protein JASMONATE RESISTANT 2
    jasmonic acid-amido synthetase JAR2
    putative Nt-gh3 deduced protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      6634487..6640438 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766578.3 → XP_015622064.1  jasmonoyl--L-amino acid synthetase GH3.3

      UniProtKB/TrEMBL
      B8AAL8, B9EU49
      Conserved Domains (1) summary
      pfam03321
      Location:23 → 570
      GH3; GH3 auxin-responsive promoter
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5NAZ7.2 GenPept UniProtKB/Swiss-Prot:Q5NAZ7

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