LOC4350685 dr1-associated corepressor [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4350685
Gene description: dr1-associated corepressor
Locus tag: OSNPB_110544700
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression: Ubiquitous expression in roots after flowering (RPKM 34.2), leaves after flowering (RPKM 32.3) and 6 other tissues See more
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: chromosome: 11

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	11	NC_029266.1 (20025946..20029617)

Chromosome 11 - NC_029266.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_029266.1 Chromosome 11 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein heterodimerization activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: dr1-associated corepressor

Names: CCAAT transcription factor; Os11g0544700

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001423415.1 → NP_001410344.1 dr1-associated corepressor

Status: VALIDATED

Source sequence(s)

AK072844, CI004416

UniProtKB/TrEMBL

A2ZF52, A3CC50, Q2R2Z2, Q8W0W7

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029266.1 Reference IRGSP-1.0 Primary Assembly

Range

20025946..20029617

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015759653.2 → XP_015615139.1 dr1-associated corepressor

UniProtKB/TrEMBL

Q2R2Z2

Conserved Domains (2) summary

COG2948
Location:165 → 230

VirB10; Type IV secretory pathway, VirB10 components [Intracellular trafficking, secretion, and vesicular transport]

COG5247
Location:3 → 89

BUR6; Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]