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    LOC4351583 trihelix transcription factor GT-3a [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351583, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4351583
    Gene description
    trihelix transcription factor GT-3a
    Locus tag
    OSNPB_120163500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 25.3), leaves after flowering (RPKM 18.7) and 6 other tissues See more
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    Genomic context

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    See LOC4351583 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (3246357..3250254, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (3218989..3222919, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene deoxyhypusine hydroxylase-A-like Neighboring gene tubby-like F-box protein 14 Neighboring gene pentatricopeptide repeat-containing protein At4g15720 Neighboring gene actin-7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    trihelix transcription factor GT-3a
    Names
    Os12g0163500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      3246357..3250254 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764437.3 → XP_015619923.1  trihelix transcription factor GT-3a

      UniProtKB/TrEMBL
      A2ZID3, A3CF83, Q2QXB1
      Conserved Domains (1) summary
      pfam13837
      Location:106 → 192
      Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain

    2. XM_066306248.1 → XP_066162345.1  trihelix transcription factor GT-3a

    Nucleotide Protein
    Heading Accession and Version

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