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    LOC4336894 probable protein-S-isoprenylcysteine O-methyltransferase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336894, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4336894
    Gene description
    probable protein-S-isoprenylcysteine O-methyltransferase
    Locus tag
    OSNPB_040602900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 8.0), flowers (RPKM 7.9) and 6 other tissues See more
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    Genomic context

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    See LOC4336894 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (30934405..30937902)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (30428176..30431743)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene alkylated DNA repair protein ALKBH8 homolog Neighboring gene dual specificity protein kinase YAK1 homolog Neighboring gene putative glucose-6-phosphate 1-epimerase Neighboring gene uncharacterized LOC4336896 Neighboring gene probable E3 ubiquitin-protein ligase RHG1A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in C-terminal protein methylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable protein-S-isoprenylcysteine O-methyltransferase
    Names
    Os04g0602900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      30934405..30937902
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781423.3 → XP_015636909.1  probable protein-S-isoprenylcysteine O-methyltransferase

      UniProtKB/Swiss-Prot
      A2XX73, A3AX47, Q01HS5, Q0JAE6, Q7XSR9
      UniProtKB/TrEMBL
      B8ATT2, B9FCB8
      Conserved Domains (1) summary
      COG2020
      Location:56 → 237
      STE14; Protein-S-isoprenylcysteine O-methyltransferase Ste14 [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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