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    LOC4347576 uncharacterized LOC4347576 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347576, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4347576
    Gene description
    uncharacterized LOC4347576
    Locus tag
    OSNPB_090515500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4347576 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (24489423..24493843)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (20078163..20082613)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4347574 Neighboring gene uncharacterized LOC9270216 Neighboring gene uncharacterized LOC136351814 Neighboring gene GTPase-activating protein gyp1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables translation initiation factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translational initiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4347576
    Names
    OSJNBb0034B12.2
    Os09g0515500
    P0450E05.27
    putative translation initiation factor IF-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      24489423..24493843
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757028.3 → XP_015612514.1  uncharacterized protein LOC4347576 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XQ60, Q0J0D3, Q69IM0
      Conserved Domains (1) summary
      cl30717
      Location:79 → 703
      InfB; Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]

    2. XM_015757029.3 → XP_015612515.1  uncharacterized protein LOC4347576 isoform X2

      Conserved Domains (5) summary
      cd01887
      Location:126 → 289
      IF2_eIF5B; Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family
      COG0532
      Location:120 → 631
      InfB; Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]
      pfam11987
      Location:405 → 513
      IF-2; Translation-initiation factor 2
      cd03692
      Location:531 → 621
      mtIF2_IVc; C2 subdomain of domain IV in mitochondrial translation initiation factor 2
      cd03702
      Location:298 → 393
      IF2_mtIF2_II; Domain II of bacterial and mitochondrial Initiation Factor 2
    Nucleotide Protein
    Heading Accession and Version

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