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    LOC4342938 F-box/FBD/LRR-repeat protein At1g13570 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342938, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4342938
    Gene description
    F-box/FBD/LRR-repeat protein At1g13570
    Locus tag
    OSNPB_070287000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 2.1), leaves before flowering (RPKM 1.7) and 6 other tissues See more
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    Genomic context

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    See LOC4342938 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (11151458..11154656)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (11060204..11063487)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136357202 Neighboring gene F-box/FBD/LRR-repeat protein At3g26920 Neighboring gene protein SLOW GREEN 1, chloroplastic Neighboring gene putative lipid-transfer protein DIR1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box/FBD/LRR-repeat protein At1g13570
    Names
    F-box LRR and FBD domain-containing protein FBLD8
    Os07g0287000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      11151458..11154656
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015790023.3 → XP_015645509.1  F-box/FBD/LRR-repeat protein At1g13570 isoform X2

      UniProtKB/TrEMBL
      A0A0P0X5L1, Q0D774
      Conserved Domains (2) summary
      sd00032
      Location:141 → 163
      LRR_2; leucine-rich repeat [structural motif]
      pfam08387
      Location:348 → 375
      FBD; FBD

    2. XM_015790021.3 → XP_015645507.1  F-box/FBD/LRR-repeat protein At1g13570 isoform X1

      UniProtKB/TrEMBL
      A0A0P0X5L1, Q0D774
      Conserved Domains (2) summary
      sd00032
      Location:141 → 163
      LRR_2; leucine-rich repeat [structural motif]
      pfam08387
      Location:348 → 389
      FBD; FBD
    Nucleotide Protein
    Heading Accession and Version

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