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    LOC4334939 uncharacterized LOC4334939 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334939, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4334939
    Gene description
    uncharacterized LOC4334939
    Locus tag
    OSNPB_040113000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flowers (RPKM 4.9), flower buds (RPKM 4.7) and 6 other tissues See more
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    Genomic context

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    See LOC4334939 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (797483..803257, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (793536..799324, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4334938 Neighboring gene uncharacterized LOC136356034 Neighboring gene LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.1 Neighboring gene uncharacterized LOC136356035 Neighboring gene uncharacterized LOC136356036

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4334939
    Names
    F-box domain-containing protein
    Os04g0113000

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      797483..803257 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781435.3 → XP_015636921.1  uncharacterized protein LOC4334939

      UniProtKB/TrEMBL
      A0A0P0W620, Q01MQ2, Q0JFD5
      Conserved Domains (1) summary
      smart00256
      Location:17 → 55
      FBOX; A Receptor for Ubiquitination Targets

    2. XM_026024886.2 → XP_025880671.1  uncharacterized protein LOC4334939

      UniProtKB/TrEMBL
      A0A0P0W620, Q01MQ2, Q0JFD5
      Conserved Domains (1) summary
      smart00256
      Location:17 → 55
      FBOX; A Receptor for Ubiquitination Targets

    3. XM_026024885.2 → XP_025880670.1  uncharacterized protein LOC4334939

      UniProtKB/TrEMBL
      A0A0P0W620, Q01MQ2, Q0JFD5
      Conserved Domains (1) summary
      smart00256
      Location:17 → 55
      FBOX; A Receptor for Ubiquitination Targets

    4. XM_026024884.2 → XP_025880669.1  uncharacterized protein LOC4334939

      UniProtKB/TrEMBL
      A0A0P0W620, Q01MQ2, Q0JFD5
      Conserved Domains (1) summary
      smart00256
      Location:17 → 55
      FBOX; A Receptor for Ubiquitination Targets

    5. XM_066309922.1 → XP_066166019.1  uncharacterized protein LOC4334939

    6. XM_066309921.1 → XP_066166018.1  uncharacterized protein LOC4334939

    7. XM_066309925.1 → XP_066166022.1  uncharacterized protein LOC4334939

    8. XM_066309926.1 → XP_066166023.1  uncharacterized protein LOC4334939

    9. XM_066309923.1 → XP_066166020.1  uncharacterized protein LOC4334939

    10. XM_066309924.1 → XP_066166021.1  uncharacterized protein LOC4334939

    Nucleotide Protein
    Heading Accession and Version

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