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    LOC4339845 uncharacterized protein At4g28440 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339845, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339845
    Gene description
    uncharacterized protein At4g28440
    Locus tag
    OSNPB_060103400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 20.2), leaves after flowering (RPKM 19.6) and 6 other tissues See more
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    Genomic context

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    See LOC4339845 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (375548..377087, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (219531..221146, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized acetyltransferase At3g50280 Neighboring gene homogentisate 1,2-dioxygenase-like Neighboring gene uncharacterized LOC112939295 Neighboring gene peroxisomal acyl-coenzyme A oxidase 1 Neighboring gene glycine--tRNA ligase, chloroplastic/mitochondrial 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein At4g28440
    Names
    OSJNBa0075G19.27-1
    Os06g0103400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      375548..377087 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015787909.3 → XP_015643395.1  uncharacterized protein At4g28440

      UniProtKB/TrEMBL
      A0A0P0WR86, A0A8J8YEH3, A2Y899, A3B7J1, Q8H632
      Conserved Domains (1) summary
      cd04491
      Location:60 → 137
      SoSSB_OBF; A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB). SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB ...
    Nucleotide Protein
    Heading Accession and Version

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