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    LOC4338583 probable esterase PIR7A [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338583, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4338583
    Gene description
    probable esterase PIR7A
    Locus tag
    OSNPB_050370700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in roots before flowering (RPKM 19.0), leaves after flowering (RPKM 4.4) and 2 other tissues See more
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    Genomic context

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    See LOC4338583 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (17921770..17928016, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (17821367..17827448, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene protein SRC2 Neighboring gene FT-interacting protein 1 Neighboring gene probable esterase PIR7A Neighboring gene small nucleolar RNA snoR100

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables methyl indole-3-acetate esterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methyl jasmonate esterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables methyl salicylate esterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in jasmonic acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in salicylic acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    esterase PIR7B; probable esterase PIR7A
    Names
    Os05g0370700

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      17921770..17928016 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782328.3 → XP_015637814.1  esterase PIR7B isoform X2

      UniProtKB/TrEMBL
      B8AXF8
      Conserved Domains (2) summary
      PLN02211
      Location:33 → 246
      PLN02211; methyl indole-3-acetate methyltransferase
      cl21494
      Location:32 → 246
      Abhydrolase; alpha/beta hydrolases

    2. XM_015782327.3 → XP_015637813.1  probable esterase PIR7A isoform X1

      UniProtKB/TrEMBL
      B8AXF8, Q0DIQ7, Q60EW8
      Conserved Domains (2) summary
      PLN02211
      Location:33 → 292
      PLN02211; methyl indole-3-acetate methyltransferase
      cl21494
      Location:32 → 292
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein
    Heading Accession and Version

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