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    LOC4342555 peptidyl-prolyl cis-trans isomerase CYP63 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342555, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4342555
    Gene description
    peptidyl-prolyl cis-trans isomerase CYP63
    Locus tag
    OSNPB_070179200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1014_E09.6; OJ1361_E02.124
    Expression
    Ubiquitous expression in flower buds (RPKM 21.5), leaves before flowering (RPKM 16.5) and 6 other tissues See more
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    Genomic context

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    See LOC4342555 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4175485..4181647)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At4g20740 Neighboring gene uncharacterized LOC112939621 Neighboring gene 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 1, chloroplastic-like Neighboring gene phosphopantetheine adenylyltransferase 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein peptidyl-prolyl isomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidyl-prolyl cis-trans isomerase CYP63
    Names
    Os07g0179200
    cyclophylin-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      4175485..4181647
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791535.2 → XP_015647021.1  peptidyl-prolyl cis-trans isomerase CYP63 isoform X2

      UniProtKB/TrEMBL
      B8B7Q2
      Conserved Domains (1) summary
      cd01926
      Location:8 → 174
      cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...

    2. XM_026027283.1 → XP_025883068.1  peptidyl-prolyl cis-trans isomerase CYP63 isoform X2

      UniProtKB/TrEMBL
      B8B7Q2
      Conserved Domains (1) summary
      cd01926
      Location:8 → 174
      cyclophilin_ABH_like; cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which ...

    3. XM_026027282.1 → XP_025883067.1  peptidyl-prolyl cis-trans isomerase CYP63 isoform X1

      UniProtKB/TrEMBL
      B8B7Q2, B9FVT7
      Conserved Domains (1) summary
      cd01926
      Location:8 → 174
      cyclophilin_ABH_like; Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding ...
    Nucleotide Protein
    Heading Accession and Version

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