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    LOC4329565 protein ORANGE-LIKE, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329565, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4329565
    Gene description
    protein ORANGE-LIKE, chloroplastic
    Locus tag
    OSNPB_020535000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1112_G07.8
    Expression
    Ubiquitous expression in roots before flowering (RPKM 41.7), leaves before flowering (RPKM 34.6) and 6 other tissues See more
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    Genomic context

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    See LOC4329565 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (19714851..19717695, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene pectinesterase inhibitor 8 Neighboring gene 40S ribosomal protein S14 Neighboring gene transfer RNA leucine (anticodon UAG) Neighboring gene probable isoaspartyl peptidase/L-asparaginase 2 Neighboring gene uncharacterized LOC107276404

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in chloroplast membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ORANGE-LIKE, chloroplastic
    Names
    B1136H02.21
    Os02g0535000
    chaperone protein dnaJ-related-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      19714851..19717695 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768214.2 → XP_015623700.1  protein ORANGE-LIKE, chloroplastic

      UniProtKB/TrEMBL
      B8AJ23, B9F0D5, Q6EPX0
      Conserved Domains (1) summary
      PRK14295
      Location:238 → 304
      PRK14295; molecular chaperone DnaJ
    Nucleotide Protein
    Heading Accession and Version

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