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    LOC4342015 putative disease resistance protein RGA1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342015, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4342015
    Gene description
    putative disease resistance protein RGA1
    Locus tag
    OSNPB_060707700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 3.4), flowers (RPKM 3.3) and 5 other tissues See more
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    Genomic context

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    See LOC4342015 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 6 NC_089040.1 (30786496..30793179, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (29917827..29924561, complement)

    Chromosome 6 - NC_089040.1Genomic Context describing neighboring genes Neighboring gene putative disease resistance protein At3g14460 Neighboring gene uncharacterized LOC107281441 Neighboring gene putative disease resistance protein RGA3 Neighboring gene uncharacterized LOC4342014 Neighboring gene putative disease resistance protein RGA3 Neighboring gene uncharacterized LOC136356910

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative disease resistance protein RGA1
    Names
    Os06g0707700
    P0621D05.33
    putative NBS-LRR disease resistance protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089040.1 Reference ASM3414082v1 Primary Assembly

      Range
      30786496..30793179 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788669.3 → XP_015644155.1  putative disease resistance protein RGA1

      UniProtKB/TrEMBL
      A3BF92, Q5Z9J6
      Conserved Domains (3) summary
      cd14798
      Location:38 → 126
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      pfam00931
      Location:282 → 567
      NB-ARC; NB-ARC domain
      cl21455
      Location:636 → 674
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    2. XM_015788668.3 → XP_015644154.1  putative disease resistance protein RGA1

      UniProtKB/TrEMBL
      A3BF92, Q5Z9J6
      Conserved Domains (3) summary
      cd14798
      Location:38 → 126
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      pfam00931
      Location:282 → 567
      NB-ARC; NB-ARC domain
      cl21455
      Location:636 → 674
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    3. XM_015788666.3 → XP_015644152.1  putative disease resistance protein RGA1

      UniProtKB/TrEMBL
      A3BF92, Q5Z9J6
      Conserved Domains (3) summary
      cd14798
      Location:38 → 126
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      pfam00931
      Location:282 → 567
      NB-ARC; NB-ARC domain
      cl21455
      Location:636 → 674
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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