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    LOC4339646 iron-sulfur cluster assembly protein 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339646, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339646
    Gene description
    iron-sulfur cluster assembly protein 1-like
    Locus tag
    OSNPB_050568100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in mature seeds (RPKM 212.2), leaves before flowering (RPKM 17.6) and 3 other tissues See more
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    Genomic context

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    See LOC4339646 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (28474918..28478353)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (28289830..28293274)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene GATA transcription factor 19 Neighboring gene 3-ketoacyl-CoA synthase 4 Neighboring gene MYB-like transcription factor EOBII Neighboring gene large ribosomal subunit protein bL12c-like Neighboring gene uncharacterized LOC107281006

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 2 iron, 2 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ferrous iron binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in intracellular iron ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in iron-sulfur cluster assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrial matrix IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    iron-sulfur cluster assembly protein 1-like
    Names
    Os05g0568100
    iron-sulfur cluster assembly scaffold protein IscU

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      28474918..28478353
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782334.3 → XP_015637820.1  iron-sulfur cluster assembly protein 1-like

      UniProtKB/TrEMBL
      A0A0P0WQD8, A2Y7K9, Q0DFV4, Q6AUN9
      Conserved Domains (1) summary
      cl00528
      Location:41 → 166
      IscU_like; Iron-sulfur cluster scaffold-like proteins
    Nucleotide Protein
    Heading Accession and Version

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