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    LOC4326040 EEF1A lysine methyltransferase 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326040, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4326040
    Gene description
    EEF1A lysine methyltransferase 2
    Locus tag
    OSNPB_010121100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 62.2), leaves after flowering (RPKM 58.4) and 6 other tissues See more
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    Genomic context

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    See LOC4326040 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (1183399..1186689)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit A Neighboring gene uncharacterized LOC9268597 Neighboring gene uncharacterized LOC4326041 Neighboring gene uncharacterized LOC4326042

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein-lysine N-methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-lysine dimethylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidyl-lysine monomethylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    EEF1A lysine methyltransferase 2
    Names
    Os01g0121100
    P0684C01.7-1
    P0684C01.7-2
    protein-lysine N-methyltransferase mettl10
    putative S locus-linked protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      1183399..1186689
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785376.1 → XP_015640862.1  EEF1A lysine methyltransferase 2

      UniProtKB/TrEMBL
      A0A0P0UXW1, A0A8J8YQV1, A0A9K3Y791, A2WK21, A2ZNP4, Q5ZEM9
      Conserved Domains (1) summary
      pfam12847
      Location:174 → 282
      Methyltransf_18; Methyltransferase domain
    Nucleotide Protein
    Heading Accession and Version

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