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    LOC4345558 MKI67 FHA domain-interacting nucleolar phosphoprotein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345558, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4345558
    Gene description
    MKI67 FHA domain-interacting nucleolar phosphoprotein
    Locus tag
    OSNPB_080412200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    ta8
    Expression
    Ubiquitous expression in mature seeds (RPKM 163.6), roots before flowering (RPKM 144.5) and 6 other tissues See more
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    Genomic context

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    See LOC4345558 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (19721381..19726047, complement)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein RGA5-like Neighboring gene uncharacterized LOC107282063 Neighboring gene disease resistance protein RGA5-like Neighboring gene 5'-adenylylsulfate reductase-like 4 Neighboring gene mitochondrial pyruvate carrier 1 Neighboring gene EVI5-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development. Ye R, et al. Plant J, 2004 Apr. PMID 15078336
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    MKI67 FHA domain-interacting nucleolar phosphoprotein
    Names
    OSJNBa0007M04.13
    Os08g0412200
    putative RNA binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      19721381..19726047 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794730.2 → XP_015650216.1  MKI67 FHA domain-interacting nucleolar phosphoprotein

      UniProtKB/TrEMBL
      A2YV71, A3BT29, Q6Z568, Q70KT2
      Conserved Domains (2) summary
      COG0724
      Location:1 → 134
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12307
      Location:55 → 126
      RRM_NIFK_like; RNA recognition motif in nucleolar protein interacting with the FHA domain of pKI-67 (NIFK) and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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