LOC4344381 protein MALE DISCOVERER 2 [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4344381
Gene description: protein MALE DISCOVERER 2
Locus tag: OSNPB_070693000
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression: Biased expression in flowers (RPKM 22.2), flower buds (RPKM 8.2) and 3 other tissues See more
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Genomic context

Location:: chromosome: 7

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	7	NC_029262.1 (29484478..29487357)

Chromosome 7 - NC_029262.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:: NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein kinase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in protein phosphorylation	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: protein MALE DISCOVERER 2

Names: Os07g0693000; P0034A04.124; probable LRR receptor-like serine/threonine-protein kinase MRH1; putative leucine-rich repeat transmembrane protein kinase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001403277.1 → NP_001390206.1 protein MALE DISCOVERER 2 precursor

Status: VALIDATED

Source sequence(s)

AK069112, CI249014, CI749853

UniProtKB/TrEMBL

A0A0P0XAH5, A2YQ75, Q0D3D3, Q84NQ1

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029262.1 Reference IRGSP-1.0 Primary Assembly

Range

29484478..29487357

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015789723.2 → XP_015645209.1 protein MALE DISCOVERER 2

UniProtKB/TrEMBL

Q84NQ1

Conserved Domains (1) summary

cl21453
Location:217 → 472

PKc_like; Protein Kinases, catalytic domain