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    LOC4348566 phenylalanine--tRNA ligase alpha subunit, cytoplasmic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348566, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4348566
    Gene description
    phenylalanine--tRNA ligase alpha subunit, cytoplasmic
    Locus tag
    OSNPB_100400800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 31.5), roots before flowering (RPKM 25.6) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 10 NC_089044.1 (14191703..14196593, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (13537552..13542435, complement)

    Chromosome 10 - NC_089044.1Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At2g22410, mitochondrial Neighboring gene tyrosine decarboxylase 1 Neighboring gene uncharacterized LOC107275261 Neighboring gene uncharacterized LOC4348568

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phenylalanine-tRNA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phenylalanyl-tRNA aminoacylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of phenylalanine-tRNA ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    phenylalanine--tRNA ligase alpha subunit, cytoplasmic
    Names
    Os10g0400800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089044.1 Reference ASM3414082v1 Primary Assembly

      Range
      14191703..14196593 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757237.3 → XP_015612723.1  phenylalanine--tRNA ligase alpha subunit, cytoplasmic

      UniProtKB/TrEMBL
      A0A8J8XCG8, B8BGP7, B9G5L9, Q0IXT4, Q338I8
      Conserved Domains (1) summary
      PLN02853
      Location:1 → 492
      PLN02853; Probable phenylalanyl-tRNA synthetase alpha chain
    Nucleotide Protein
    Heading Accession and Version

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