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    LOC4332679 protein ROLLING AND ERECT LEAF 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332679, updated on 12-Jul-2024

    Summary

    Gene symbol
    LOC4332679
    Gene description
    protein ROLLING AND ERECT LEAF 2-like
    Locus tag
    OSNPB_030321500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 44.4), leaves after flowering (RPKM 37.2) and 6 other tissues See more
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    Genomic context

    See LOC4332679 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (11684019..11690060, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (11629370..11635554, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene F-box protein At5g46170 Neighboring gene uncharacterized LOC4332678 Neighboring gene WRKY DNA-binding transcription factor 70 Neighboring gene octanoyltransferase LIP2, mitochondrial

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    protein ROLLING AND ERECT LEAF 2-like
    Names
    Os03g0321500

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      11684019..11690060 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776473.3XP_015631959.1  protein ROLLING AND ERECT LEAF 2-like isoform X2

      UniProtKB/TrEMBL
      A0A8J8YEF1, A3AHF3, B8ANE5, Q0DSB3, Q10M67
      Conserved Domains (3) summary
      NF000535
      Location:225362
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
      pfam04782
      Location:398742
      DUF632; Protein of unknown function (DUF632)
      pfam04783
      Location:159
      DUF630; Protein of unknown function (DUF630)
    2. XM_015776472.3XP_015631958.1  protein ROLLING AND ERECT LEAF 2-like isoform X2

      UniProtKB/TrEMBL
      A0A8J8YEF1, A3AHF3, B8ANE5, Q0DSB3, Q10M67
      Conserved Domains (3) summary
      NF000535
      Location:225362
      MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
      pfam04782
      Location:398742
      DUF632; Protein of unknown function (DUF632)
      pfam04783
      Location:159
      DUF630; Protein of unknown function (DUF630)
    3. XM_015776471.3XP_015631957.1  protein ROLLING AND ERECT LEAF 2-like isoform X1

      Conserved Domains (2) summary
      pfam04782
      Location:430774
      DUF632; Protein of unknown function (DUF632)
      pfam04783
      Location:3189
      DUF630; Protein of unknown function (DUF630)