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    LOC4342993 protein ROOT INITIATION DEFECTIVE 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342993, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4342993
    Gene description
    protein ROOT INITIATION DEFECTIVE 3
    Locus tag
    OSNPB_070408100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1723_B06.131
    Expression
    Ubiquitous expression in flower buds (RPKM 13.7), flowers (RPKM 10.9) and 6 other tissues See more
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    Genomic context

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    See LOC4342993 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (12831055..12839227, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (12676089..12684334, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4342991 Neighboring gene protein DMP5 Neighboring gene uncharacterized LOC136357173 Neighboring gene rho GTPase-activating protein 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of nuclear pre-replicative complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein ROOT INITIATION DEFECTIVE 3
    Names
    Os07g0408100
    P0492E07.101
    WD domain, G-beta repeat domain-containing protein
    transducin / WD-40 repeat protein family -like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      12831055..12839227 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792263.3 → XP_015647749.1  protein ROOT INITIATION DEFECTIVE 3 isoform X2

      UniProtKB/TrEMBL
      A0A0P0X5U1, B9FWR9, Q0D724
      Conserved Domains (2) summary
      sd00039
      Location:84 → 120
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:82 → 312
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    2. XM_015792261.3 → XP_015647747.1  protein ROOT INITIATION DEFECTIVE 3 isoform X1

      UniProtKB/TrEMBL
      B9FWR9
      Conserved Domains (2) summary
      sd00039
      Location:84 → 120
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:82 → 312
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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