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    LOC4325942 myosin-17 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325942, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4325942
    Gene description
    myosin-17
    Locus tag
    OSNPB_010713900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 13.2), flowers (RPKM 10.1) and 5 other tissues See more
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    Genomic context

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    See LOC4325942 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    53
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (30240966..30263726, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (29652594..29675415, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene B3 domain-containing protein LFL1-like Neighboring gene KRR1 small subunit processome component homolog Neighboring gene protein PLASTID MOVEMENT IMPAIRED 1-RELATED 1 Neighboring gene uncharacterized LOC4325944

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables microfilament motor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle transport along actin filament IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of myosin complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    myosin-17
    Names
    Os01g0713900

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      30240966..30263726 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015760829.3 → XP_015616315.1  myosin-17 isoform X10

      Conserved Domains (3) summary
      COG5022
      Location:9 → 1501
      COG5022; Myosin heavy chain [General function prediction only]
      cd15475
      Location:1650 → 2016
      MyosinXI_CBD; cargo binding domain of myosin XI
      cd01384
      Location:76 → 719
      MYSc_Myo11; class XI myosin, motor domain

    2. XM_015760817.3 → XP_015616303.1  myosin-17 isoform X8

      Conserved Domains (8) summary
      cl14654
      Location:996 → 1244
      V_Alix_like; Protein-interacting V-domain of mammalian Alix and related domains
      smart00242
      Location:58 → 730
      MYSc; Myosin. Large ATPases
      COG1340
      Location:920 → 1169
      COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
      cd15475
      Location:1706 → 2072
      MyosinXI_CBD; cargo binding domain of myosin XI
      cd01384
      Location:76 → 719
      MYSc_Myo11; class XI myosin, motor domain
      pfam02736
      Location:11 → 48
      Myosin_N; Myosin N-terminal SH3-like domain
      pfam15450
      Location:1094 → 1527
      DUF4631; Domain of unknown function (DUF4631)
      cl02488
      Location:884 → 1040
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

    3. XM_015760807.3 → XP_015616293.1  myosin-17 isoform X6

      Conserved Domains (6) summary
      smart00242
      Location:58 → 730
      MYSc; Myosin. Large ATPases
      cd15475
      Location:1818 → 2184
      MyosinXI_CBD; cargo binding domain of myosin XI
      cd01384
      Location:76 → 719
      MYSc_Myo11; class XI myosin, motor domain
      pfam02736
      Location:11 → 48
      Myosin_N; Myosin N-terminal SH3-like domain
      pfam10174
      Location:875 → 1637
      Cast; RIM-binding protein of the cytomatrix active zone
      cl02488
      Location:884 → 1040
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

    4. XM_015760801.3 → XP_015616287.1  myosin-17 isoform X3

      Conserved Domains (4) summary
      COG1196
      Location:1437 → 1803
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      COG5022
      Location:9 → 1541
      COG5022; Myosin heavy chain [General function prediction only]
      cd15475
      Location:1874 → 2240
      MyosinXI_CBD; cargo binding domain of myosin XI
      cd01384
      Location:76 → 719
      MYSc_Myo11; class XI myosin, motor domain

    5. XM_015760813.3 → XP_015616299.1  myosin-17 isoform X7

      Conserved Domains (8) summary
      smart00242
      Location:58 → 730
      MYSc; Myosin. Large ATPases
      COG1340
      Location:920 → 1169
      COG1340; Uncharacterized coiled-coil protein, contains DUF342 domain [Function unknown]
      cd15475
      Location:1762 → 2128
      MyosinXI_CBD; cargo binding domain of myosin XI
      cd01384
      Location:76 → 719
      MYSc_Myo11; class XI myosin, motor domain
      pfam02736
      Location:11 → 48
      Myosin_N; Myosin N-terminal SH3-like domain
      pfam15450
      Location:1094 → 1583
      DUF4631; Domain of unknown function (DUF4631)
      cl02488
      Location:884 → 1040
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...
      cl23750
      Location:1299 → 1400
      vATP-synt_E; ATP synthase (E/31 kDa) subunit

    6. XM_026020477.2 → XP_025876262.1  myosin-17 isoform X4

      Conserved Domains (5) summary
      cd15475
      Location:1874 → 2240
      MyosinXI_CBD; cargo binding domain of myosin XI
      TIGR02794
      Location:879 → 1094
      tolA_full; TolA protein
      cd01384
      Location:76 → 719
      MYSc_Myo11; class XI myosin, motor domain
      pfam02736
      Location:10 → 48
      Myosin_N; Myosin N-terminal SH3-like domain
      cl25732
      Location:999 → 1767
      SMC_N; RecF/RecN/SMC N terminal domain

    7. XM_015760790.3 → XP_015616276.1  myosin-17 isoform X2

      Conserved Domains (5) summary
      COG1196
      Location:999 → 1792
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      COG4372
      Location:1728 → 1894
      COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]
      cd15475
      Location:1983 → 2349
      MyosinXI_CBD; cargo binding domain of myosin XI
      cd01384
      Location:76 → 719
      MYSc_Myo11; class XI myosin, motor domain
      pfam02736
      Location:10 → 48
      Myosin_N; Myosin N-terminal SH3-like domain

    8. XM_015760785.3 → XP_015616271.1  myosin-17 isoform X1

      Conserved Domains (5) summary
      COG1196
      Location:999 → 1792
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      COG4372
      Location:1728 → 1894
      COG4372; Uncharacterized conserved protein, contains DUF3084 domain [Function unknown]
      cd15475
      Location:1986 → 2352
      MyosinXI_CBD; cargo binding domain of myosin XI
      cd01384
      Location:76 → 719
      MYSc_Myo11; class XI myosin, motor domain
      pfam02736
      Location:10 → 48
      Myosin_N; Myosin N-terminal SH3-like domain

    9. XM_015760805.3 → XP_015616291.1  myosin-17 isoform X5

      Conserved Domains (5) summary
      smart00242
      Location:7 → 596
      MYSc; Myosin. Large ATPases
      cd15475
      Location:1852 → 2218
      MyosinXI_CBD; cargo binding domain of myosin XI
      TIGR04523
      Location:925 → 1606
      Mplasa_alph_rch; helix-rich Mycoplasma protein
      cd01384
      Location:7 → 585
      MYSc_Myo11; class XI myosin, motor domain
      cl02488
      Location:750 → 906
      SPEC; Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; ...

    10. XM_015760822.3 → XP_015616308.1  myosin-17 isoform X9

      Conserved Domains (3) summary
      TIGR04523
      Location:733 → 1414
      Mplasa_alph_rch; helix-rich Mycoplasma protein
      cl22853
      Location:37 → 393
      Motor_domain; Myosin and Kinesin motor domain
      cl03379
      Location:1660 → 2026
      Myo5-like_CBD; Cargo binding domain of myosin 5 and similar proteins
    Nucleotide Protein
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